PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023133-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 250aa    MW: 27480.6 Da    PI: 5.1313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023133-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.17.7e-14198243655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k+Lq
  NNU_023133-RA 198 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKYLQ 243
                    689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15195249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.36E-14196247No hitNo description
Gene3DG3DSA:4.10.280.101.6E-15197248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-13198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-11198243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQQQHLMSGG GGGSGGGYET SRGLARFRSA PATWFENLLQ DDEPLTQNQC LPQVPFSTST  60
TAPVGNSANF SSDEGDAAFF ETSVANTGFG FLTRQNSSPA GFLGHLTSQP SIGCDGFMTN  120
FDIPSSMDYL SLPDFPSNKR PRDLGSEQEA ATHFSAELKG EQSVGLQSFS DMEMERVFSD  180
SVPCRVRAKR GCATHPRSIA ERVRRTRISD RIRKLQELVP NMDKQTNTAD MLEEAVEYVK  240
YLQKQIQVLC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242689.10.0PREDICTED: transcription factor bHLH80
SwissprotQ9C8P86e-68BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A061FJR82e-76A0A061FJR8_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
TrEMBLA0A061FKW98e-77A0A061FKW9_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2
STRINGPGSC0003DMT4000804181e-68(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.14e-59bHLH family protein